Genotype download

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Name Location. History current selection Data: Samples Aggregates by population. To use tabix you must also use a VCFtools Perl script called vcf-subset. The command line would look like:.

Our standard AF values are allele frequencies rounded to two decimal places calculated using allele count AC and allele number AN values. LDAF is the allele frequency as inferred from the haplotype estimation. This generally means there are many uncertain genotypes for this site.

This is particularly true close to the ends of the chromosomes. The phase 1 data set also contains Genotype Dosage values.

The Dosage represents the predicted dosage of the non reference allele given the data available, it will always have a value between 0 and 2. The dosage value gives an indication of how well the genotype is supported by the imputation engine. The genotype likelihood gives an indication of how well the genotype is supported by the sequence data. HLA diversity is not something which was studied by the Genomes Project directly. The most recent of these studies was published by Laurent Abi-Rached, Julien Paganini and colleagues in and covers 2, samples from the work of the Genomes Project.

Developer's Description By Andrei Radulescu. Full Specifications. What's new in version 1. Release November 6, Date Added March 12, Operating Systems. Total Downloads 2, Downloads Last Week 6. Report Software. Related Software. Generate chemical structure drawing with multiple features.

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